Description Usage Arguments Value Examples
Functions to classify interactions within GInteractions objects.
'isInteractionType' takes two character arguments which are annotated node classes and returns interactions between them.
'is.pp', 'is.pd' etc. are bindings for common annotations:
promoter
distal
terminator
'is.trans' & 'is.cis' select trans-chromosomal and intra-chromosomal interactions, respectively
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 | is.pp(GIObject)
is.pd(GIObject)
is.pt(GIObject)
is.dd(GIObject)
is.dt(GIObject)
is.tt(GIObject)
isInteractionType(GIObject, x, y)
is.trans(GIObject)
is.cis(GIObject)
## S4 method for signature 'GInteractions'
is.pp(GIObject)
## S4 method for signature 'GInteractions'
is.pd(GIObject)
## S4 method for signature 'GInteractions'
is.pt(GIObject)
## S4 method for signature 'GInteractions'
is.dd(GIObject)
## S4 method for signature 'GInteractions'
is.dt(GIObject)
## S4 method for signature 'GInteractions'
is.tt(GIObject)
## S4 method for signature 'GInteractions'
isInteractionType(GIObject, x, y)
## S4 method for signature 'GInteractions'
is.trans(GIObject)
## S4 method for signature 'GInteractions'
is.cis(GIObject)
|
GIObject |
A GInteractions object |
x, y |
Names of annotated node classes |
A logical vector
1 2 3 |
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