export.igraph: Export interactions to an igraph object.
In GenomicInteractions: Utilities for handling genomic interaction data
Description
Usage
Arguments
Value
Examples
Description
Exports a GInteractions object to graph.data.frame for use by igraph package. This uses unique anchors
as nodes and generates edges between them. For the resulting graph to be easily interpretable, anchors
should be non-overlapping. This should already be the case for HiC data (either binned or restriction
fragments), however ChIA-PET data can contain overlapping anchors, which may need to be reduced to
non-overlapping regions before graph export.
Usage
1
2
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export.igraph(GIObject)
## S4 method for signature 'GInteractions'
export.igraph(GIObject)
Arguments
GIObject
A GInteractions object.
Value
a graph.data.frame representation of the GInteractions object
Examples
1
2
GenomicInteractions documentation built on Nov. 8, 2020, 8:19 p.m.
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Description Usage Arguments Value Examples
Description
Exports a GInteractions object to graph.data.frame for use by igraph package. This uses unique anchors as nodes and generates edges between them. For the resulting graph to be easily interpretable, anchors should be non-overlapping. This should already be the case for HiC data (either binned or restriction fragments), however ChIA-PET data can contain overlapping anchors, which may need to be reduced to non-overlapping regions before graph export.
Usage
1 2 3 4 | export.igraph(GIObject)
## S4 method for signature 'GInteractions'
export.igraph(GIObject)
|
Arguments
GIObject |
A GInteractions object. |
Value
a graph.data.frame representation of the GInteractions object
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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