hic_example_data: Example HiC dataset
In GenomicInteractions: Utilities for handling genomic interaction data
Description
Usage
Format
Value
References
Description
This dataset contains HiC data from Seitan et al. 2013. The data was
analysed using HOMER (Heinz et al. 2010) at a resolution of 100kb to
find significant interactions. This example dataset has been filtered
to retain only interactions on chromosomes 14 and 15 with a FDR < 0.1.
The data has also been annotated for overlaps with Refseq promoters.
See the HiC analysis vignette (vignettes(GenomicInteractions)) for
more information on how this dataset was created.
Usage
1
Format
A GenomicInteractions object with length 8171.
Value
GenomicInteractions object
References
Seitan, V. C. et al. Cohesin-based chromatin interactions enable
regulated gene expression within pre-existing architectural compartments.
Genome Res. 23, 2066-77 (2013).
Heinz S, Benner C, Spann N, Bertolino E et al. Simple Combinations of
Lineage-Determining Transcription Factors Prime cis-Regulatory Elements
Required for Macrophage and B Cell Identities. Mol Cell 2010
May 28;38(4):576-589.
GenomicInteractions documentation built on Nov. 8, 2020, 8:19 p.m.
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Description Usage Format Value References
Description
This dataset contains HiC data from Seitan et al. 2013. The data was
analysed using HOMER (Heinz et al. 2010) at a resolution of 100kb to
find significant interactions. This example dataset has been filtered
to retain only interactions on chromosomes 14 and 15 with a FDR < 0.1.
The data has also been annotated for overlaps with Refseq promoters.
See the HiC analysis vignette (vignettes(GenomicInteractions)) for
more information on how this dataset was created.
Usage
1 |
Format
A GenomicInteractions object with length 8171.
Value
GenomicInteractions object
References
Seitan, V. C. et al. Cohesin-based chromatin interactions enable regulated gene expression within pre-existing architectural compartments. Genome Res. 23, 2066-77 (2013).
Heinz S, Benner C, Spann N, Bertolino E et al. Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities. Mol Cell 2010 May 28;38(4):576-589.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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