Files in GenomicScores

Infrastructure to work with genomewide position-specific scores

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

R/availableGScores.R R/methods-shinyApp.R R/makeGScoresPackage.R R/methods-GScores.R R/AllClasses.R R/AllGeneric.R R/getGScores.R

vignettes/bibliography.bib

vignettes/GenomicScores.Rmd man/GScores-class.Rd man/igscores.Rd man/GenomicScores-defunct.Rd man/makeGScoresPackage.Rd man/GenomicScores-deprecated.Rd man/rgscores.Rd man/gscores.Rd man/availableGScores.Rd

inst/CITATION

inst/doc/GenomicScores.html

inst/doc/GenomicScores.R inst/doc/GenomicScores.Rmd

inst/extdata/metadata_phyloP60way.UCSC.mm10.csv

inst/extdata/metadata_phyloP100way.UCSC.hg38.csv

inst/extdata/cadd.v1.3.hg19.chr22.rds

inst/extdata/metadata_fitCons.UCSC.hg19.csv

inst/extdata/origphastCons100wayhg19CDS.rds

inst/extdata/metadata_phastCons30way.UCSC.hg38.csv

inst/extdata/metadata_phastCons46wayPrimates.UCSC.hg19.csv

inst/extdata/metadata_phastCons46wayPlacental.UCSC.hg19.csv

inst/extdata/avgs.rds

inst/extdata/metadata_phastCons60way.UCSC.mm10.csv

inst/extdata/origphastCons100wayhg193UTR.rds

inst/extdata/GScoresResourcesMetadata.csv.gz

inst/extdata/metadata_phastCons100way.UCSC.hg38.csv

inst/extdata/mcap.v1.0.hg19.chr22.rds

inst/extdata/metadata_phastCons27way.UCSC.dm6.csv

inst/extdata/metadata_phastCons7way.UCSC.hg38.csv

inst/extdata/avgsbmi.rds

inst/extdata/metadata_linsight.UCSC.hg19.csv

inst/extdata/metadata_MCAP.v1.0.hg19.csv

inst/extdata/metadata_CADD.v1.3.hg19.csv

inst/extdata/metadata_phyloP100way.UCSC.hg19.csv

inst/extdata/eyersids.rds

inst/extdata/metadata_phastCons100way.UCSC.hg19.csv

inst/scripts/make-data_fitCons.UCSC.hg19.R inst/scripts/make-metadata_MCAP.v1.0.hg19.R inst/scripts/make-data_phastCons7way.UCSC.hg38.R inst/scripts/make-data_MafDb.1Kgenomes.phase3.GRCh38.R inst/scripts/make-data_MafDb.gnomAD.r2.1.hs37d5.R inst/scripts/make-data_phastCons100way.UCSC.hg38.R inst/scripts/make-data_phastCons27way.UCSC.dm6.R inst/scripts/make-data_MafDb.ExAC.r1.0.hs37d5.R inst/scripts/make-data_MafDb.TOPMed.freeze5.hg19.R inst/scripts/make-data_MafH5.gnomAD.r3.0.GRCh38.R inst/scripts/make-data_linsight.UCSC.hg19.R inst/scripts/make-metadata_phyloP100way.UCSC.hg38.R inst/scripts/make-metadata_fitCons.UCSC.hg19.R inst/scripts/make-data_MafDb.1Kgenomes.phase1.GRCh38.R inst/scripts/make-data_MafDb.1Kgenomes.phase1.hs37d5.R inst/scripts/make-data_MafDb.ExAC.r1.0.GRCh38.R inst/scripts/make-data_MafDb.gnomADex.r2.1.hs37d5.R inst/scripts/make-data_MafDb.gnomAD.r3.0.GRCh38.R inst/scripts/make-data_MafDb.TOPMed.freeze5.hg38.R inst/scripts/make-data_MafDb.1Kgenomes.phase3.hs37d5.R inst/scripts/make-metadata_phastCons60way.UCSC.mm10.R inst/scripts/make-data_cadd.v1.3.hg19.R inst/scripts/make-metadata_phastCons100way.UCSC.hg19.R inst/scripts/make-metadata_phastCons30way.UCSC.hg38.R inst/scripts/make-data_phastCons46wayPlacental.UCSC.hg19.R inst/scripts/make-data_phastCons60way.UCSC.mm10.R inst/scripts/make-data_MafDb.ExAC.r1.0.nonTCGA.hs37d5.R inst/scripts/make-metadata_phastCons46wayPlacental.UCSC.hg19.R inst/scripts/make-data_MafDb.gnomAD.r2.1.GRCh38.R inst/scripts/make-metadata_phastCons7way.UCSC.hg38.R inst/scripts/make-metadata_phastCons27way.UCSC.dm6.R inst/scripts/make-metadata_phastCons46wayPrimates.UCSC.hg19.R inst/scripts/make-data_phastCons100way.UCSC.hg19.R inst/scripts/make-data_mcap.v1.0.hg19.R inst/scripts/make-metadata_phyloP60way.UCSC.mm10.R inst/scripts/make-metadata_phastCons100way.UCSC.hg38.R inst/scripts/make-data_MafDb.ExAC.r1.0.nonTCGA.GRCh38.R inst/scripts/make-metadata_phyloP100way.UCSC.hg19.R inst/scripts/make-metadata_CADD.v1.3.hg19.R inst/scripts/make-data_phyloP100way.UCSC.hg38.R inst/scripts/make-metadata_linsight.UCSC.hg19.R inst/scripts/make-data_phastCons46wayPrimates.UCSC.hg19.R inst/scripts/make-data_phastCons30way.UCSC.hg38.R inst/scripts/make-data_phyloP60way.UCSC.mm10.R inst/scripts/make-data_MafDb.gnomADex.r2.1.GRCh38.R inst/scripts/make-data_phyloP100way.UCSC.hg19.R inst/shinyApp/ui.R inst/shinyApp/server.R inst/shinyApp/global.R inst/shinyApp/about.md

inst/shinyApp/www/GenomicScores.png

inst/shinyApp/www/style.css

inst/gscores-template/NAMESPACE

inst/gscores-template/DESCRIPTION

inst/gscores-template/R/zzz.R

inst/gscores-template/man/package.Rd

inst/gscores-template/inst/extdata/.gitkeep

GenomicScores documentation built on Nov. 8, 2020, 5:21 p.m.