availableGScores: Exploring genomic scores resources

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/availableGScores.R

Description

Functions to explore genomic scores resources.

Usage

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Arguments

x

Acharacter vector of length 1 specifiying the genomic scores resource to fetch.

use.internet

A logical value specifying whether we want to check through the internet whether the annotation packages and AnnotationHub resources are ready to be downloaded. By default, i.e. use.internet=FALSE, this is not checked to speed up the execution of this function.

Details

The function availableGScores() shows genomic score sets available as AnnotationHub online resources.

Value

The function availableGScores() returns a data.frame object with a row for each available resource of genomic scores and the following four columns:

The function getGScores() returns a GScores object.

Author(s)

R. Castelo

References

Puigdevall, P. and Castelo, R. GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor. Bioinformatics, 18:3208-3210, 2018.

See Also

getGScores() phastCons100way.UCSC.hg19 MafDb.1Kgenomes.phase1.hs37d5

Examples

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availableGScores()

## Not run: 
gsco <- getGScores("cadd.v1.3.hg19")

## End(Not run)

GenomicScores documentation built on Nov. 8, 2020, 5:21 p.m.