makeGScoresPackage: Building genomic gscores packages
In GenomicScores: Infrastructure to work with genomewide position-specific scores

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/makeGScoresPackage.R

Build a genomic gscores packages from a GScores object.

1 2	makeGScoresPackage(gsco, version, maintainer, author, destDir=".", license="Artistic-2.0")

`gsco`	`GScores`. The `GScores` object from which the package will be created.
`version`	`Character`. Version of the package.
`maintainer`	`Character`. Maintainer of the package, including email.
`author`	`Character`. Author of the package.
`destDir`	`Character`. The path to the directory where the package will be created.
`license`	`Character`. The license of the package.

This function allows one to create an R package from a GScores object. This may be useful if one wants to have a tar-ball package version of genomic scores available only through the AnnotationHub; see the vignette.

It returns invisibily the package directory.

R. Castelo

Puigdevall, P. and Castelo, R. GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor. Bioinformatics, 18:3208-3210, 2018.

availableGScores() getGScores()

## accessing genomic scores from AnnotationHub resources
## and building a package from them
## Not run: 
availableGScores()
gsco <- getGScores("fitCons.UCSC.hg19")
makeGScoresPackage(gsco, version="1.0", maintainer="me <me@example.com>", author="me")

## End(Not run)