Man pages for HTqPCR
Automated analysis of high-throughput qPCR data
| cbind | Combine qPCRset objects |
| changeCtLayout | Changing the dimensions (rows x columns) of qPCRset objects |
| clusterCt | Clustering of qPCR Ct values |
| filterCategory | Filter Ct values based on their feature categories. |
| filterCtData | Filter out features (genes) from qPCR data. |
| heatmapSig | Heatmap of deltadeltaCt values from qPCR data. |
| HTqPCR-package | Analysis of High-Throughput qPCR data (HTqPCR) |
| limmaCtData | Differentially expressed features with qPCR: limma |
| mannwhitneyCtData | Differentially expressed features with qPCR: Mann-Whitney |
| normalizeCtData | Normalization of Ct values from qPCR data. |
| plotCtArray | Image plot of qPCR Ct values from an array format |
| plotCtBoxes | Boxplots for qPCR Ct values. |
| plotCtCard | Image plot of qPCR Ct values from a card format |
| plotCtCategory | Summarising the feature categories for Ct values. |
| plotCtCor | Correlation between Ct values from qPCR data |
| plotCtDensity | Distribution plot for qPCR Ct values. |
| plotCtHeatmap | Heatmap of qPCR Ct values. |
| plotCtHistogram | Histrogram of Ct values from qPCR experiments. |
| plotCtOverview | Overview plot of qPCR Ct values across multiple conditions. |
| plotCtPairs | Pairwise scatterplot of multiple sets of Ct values from qPCR... |
| plotCtPCA | PCA for qPCR Ct values. |
| plotCtReps | Scatter plot of features analysed twice during each qPCR... |
| plotCtRQ | Plot the relative quantification of Ct values from qPCR... |
| plotCtScatter | Scatterplot of two sets of Ct values from qPCR data. |
| plotCtSignificance | Barplot with Ct values between genes from qPCR. |
| plotCtVariation | Plot variation in Ct values across replicates |
| plotCVBoxes | Boxplots of CV for qPCR Ct values. |
| plotGenes | Plotting Ct values from qPCR across multiple samples. |
| qPCRpros | Example processed qPCR data |
| qPCRraw | Example raw qPCR data. |
| qPCRset-class | Class "qPCRset" |
| readCtData | Reading Ct values from qPCR experiments data into a qPCRset |
| setCategory | Assign categories to Ct values from qPCR data. |
| ttestCtData | Differentially expressed features with qPCR: t-test |
