LBE: Estimation of the false discovery rate.
Version 1.44.0

LBE is an efficient procedure for estimating the proportion of true null hypotheses, the false discovery rate (and so the q-values) in the framework of estimating procedures based on the marginal distribution of the p-values without assumption for the alternative hypothesis.

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AuthorCyril Dalmasso
Bioconductor views MultipleComparison
Date of publicationNone
MaintainerCyril Dalmasso <dalmasso@vjf.inserm.fr>
LicenseGPL-2
Version1.44.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("LBE")

Man pages

golub.pval: p-values corresponding to the gene expression data from Golub...
hedenfalk.pval: p-values corresponding to the gene expression data from...
LBE: Estimation of the false discovery rate.
LBEa: Optimal setting for the parameter a
LBE-package: Estimation of the proportion of true null hypotheses, the...
LBEplot: Graphical display of LBE objects.
LBEsummary: Display LBE object
LBEwrite: Write the results of an LBE object to a file.

Functions

LBE Man page
LBE-package Man page
LBEa Man page
LBEplot Man page
LBEsummary Man page
LBEwrite Man page
golub.pval Man page
hedenfalk.pval Man page

Files

DESCRIPTION
NAMESPACE
R
R/LBE.R
R/LBEa.R
R/LBEplot.R
R/LBEsummary.R
R/LBEwrite.R
build
build/vignette.rds
data
data/golub.pval.rda
data/hedenfalk.pval.rda
inst
inst/doc
inst/doc/LBE.R
inst/doc/LBE.Rnw
inst/doc/LBE.pdf
man
man/LBE-package.Rd
man/LBE.Rd
man/LBEa.Rd
man/LBEplot.Rd
man/LBEsummary.Rd
man/LBEwrite.Rd
man/golub.pval.Rd
man/hedenfalk.pval.Rd
vignettes
vignettes/LBE.Rnw
LBE documentation built on May 20, 2017, 10:37 p.m.