LBEplot: Graphical display of LBE objects.

In LBE: Estimation of the false discovery rate.

Description

Graphical display of LBE objects.

Usage

LBEplot(LBEobj, rng = c(0, 0.1), plot.type = c("multiple", "main"), legend = TRUE)

Arguments

LBEobj	LBE object.
rng	Range of q-values to consider.
plot.type	If plot.type == "main", The estimated q-values versus the p-values are plotted together with the histogram of the p-values. If plot.type == "multiple" (default value), several graphics are displayed.
legend	Logical value for displaying the legend on the plot (when plot.type == "main").

Details

If plot.type == "multiple", the following graphics are displayed: 1. The histogram of the p-values. 2. The estimated q-values versus the p-values. 3. The number of significant tests versus each qvalue cutoff. 4. The number of expected false positives versus the number of significant tests.

Note

The function LBEplot is analogous to the function qplot from the package qvalue.

Author(s)

Cyril Dalmasso

See Also

LBE, LBEsummary, LBEwrite, LBEa

Examples

## start
data(hedenfalk.pval)
res=LBE(hedenfalk.pval,plot.type="none")
LBEplot(res)
LBEplot(res,plot.type="main")
LBEplot(res,plot.type="main",legend=FALSE)
## end

LBE documentation built on Nov. 8, 2020, 5:58 p.m.