The package LBE allows estimating the proportion of true null hypotheses and the false discovery rate.
Cyril Dalmasso Maintainer: Cyril Dalmasso [email protected]
Dalmasso C, Broet P, Moreau T (2005): A simple procedure for estimating the false discovery rate. Bioinformatics, 21: 660 - 668.
Storey JD and Tibshirani R. (2003). Statistical significance for genome-wide studies. Proc Natl Acad Sci, 100, 9440-9445.
LBE is an alternative method to the one proposed by Storey and Tibshirani (2003) for estimating the q-values, this latter method being implemented in the package
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