LBEsummary: Display LBE object

In LBE: Estimation of the false discovery rate.

Description

Display summary information for an LBE object.

Usage

LBEsummary(LBEobj, cuts = c(1e-04, 0.001, 0.01, 0.025, 0.05, 0.1, 1), digits = getOption("digits"), ...)

Arguments

LBEobj	LBE object.
cuts	Vector of significance value to use for table.
digits	Significant digits to display.
...	Any other arguments.

Details

LBEsumary shows the original call, estimated proportion of true null hypotheses, confidence interval for the proportion of true null hypotheses and a table comparing the number of significant calls for the p-values and for the estimated q-values using a set of cutoffs given by the argument cuts.

Value

Invisibly returns the original object.

Note

The function LBEsummary is analogous to the function qsummary from the package qvalue.

Author(s)

Cyril Dalmasso

See Also

LBE, LBEplot, LBEwrite, LBEa

Examples

## start
data(hedenfalk.pval)
res<-LBE(hedenfalk.pval)
print(res)
LBEsummary(res)
## end

LBE documentation built on Nov. 8, 2020, 5:58 p.m.