API for LineagePulse
Differential expression analysis and model fitting for single-cell RNA-seq data
| Global functions | |
|---|---|
| $,LineagePulseObject-method | Man page |
| LPsetters | Man page |
| LineagePulse | Man page |
| LineagePulseObject-class | Man page |
| [[,LineagePulseObject,character,missing-method | Man page |
| `boolFixedPopulation<-` | Man page Source code |
| `dfAnnotationProc<-` | Man page Source code |
| `dfResults<-` | Man page Source code |
| `lsDispModelConst<-` | Man page Source code |
| `lsDispModelH0<-` | Man page Source code |
| `lsDispModelH0_NB<-` | Man page Source code |
| `lsDispModelH1<-` | Man page Source code |
| `lsDispModelH1_NB<-` | Man page Source code |
| `lsDropModel<-` | Man page Source code |
| `lsFitConvergence<-` | Man page Source code |
| `lsMuModelConst<-` | Man page Source code |
| `lsMuModelH0<-` | Man page Source code |
| `lsMuModelH0_NB<-` | Man page Source code |
| `lsMuModelH1<-` | Man page Source code |
| `lsMuModelH1_NB<-` | Man page Source code |
| `matCountsProc<-` | Man page Source code |
| `matWeights<-` | Man page Source code |
| `scaDFSplinesDisp<-` | Man page Source code |
| `scaDFSplinesMu<-` | Man page Source code |
| `scaOmega<-` | Man page Source code |
| `strReport<-` | Man page Source code |
| `strVersion<-` | Man page Source code |
| `vecAllGenes<-` | Man page Source code |
| `vecConfoundersDisp<-` | Man page Source code |
| `vecConfoundersMu<-` | Man page Source code |
| `vecH0Pop<-` | Man page Source code |
| `vecNormConst<-` | Man page Source code |
| accessors | Man page |
| boolFixedPopulation | Man page |
| boolFixedPopulation<- | Man page |
| boolFixedPopulations | Man page Source code |
| calcNormConst | Man page Source code |
| calcPostDrop_Matrix | Man page Source code |
| calcPostDrop_Vector | Man page Source code |
| decompressDispByGene | Man page Source code |
| decompressDispByGeneMM | Man page Source code |
| decompressDropoutRateByCell | Man page Source code |
| decompressDropoutRateByGene | Man page Source code |
| decompressMeansByGene | Man page Source code |
| decompressMuByGeneMM | Man page Source code |
| dfAnnotationProc | Man page Man page Source code |
| dfAnnotationProc<- | Man page |
| dfResults | Man page Man page Source code |
| dfResults<- | Man page |
| evalDropoutModel | Man page Source code |
| evalDropoutModel_comp | Man page |
| evalImpulseModel | Man page Source code |
| evalImpulseModel_comp | Man page |
| evalLogLikGene | Man page Source code |
| evalLogLikGeneMM | Man page Source code |
| evalLogLikMatrix | Man page Source code |
| evalLogLikMuDispGeneFit | Man page Source code |
| evalLogLikMuDispGeneFit_comp | Man page |
| evalLogLikNB | Man page Source code |
| evalLogLikNB_comp | Man page |
| evalLogLikPiZINB_ManyCells | Man page Source code |
| evalLogLikPiZINB_ManyCells_comp | Man page |
| evalLogLikPiZINB_SingleCell | Man page Source code |
| evalLogLikPiZINB_SingleCell_comp | Man page |
| evalLogLikZINB | Man page Source code |
| evalLogLikZINB_comp | Man page |
| fitLPModels | Man page Source code |
| fitModel | Man page Source code |
| fitMuDisp | Man page Source code |
| fitMuDispGene | Man page Source code |
| fitMuDispGeneImpulse | Man page Source code |
| fitMuDispGeneMM | Man page Source code |
| fitPi | Man page Source code |
| fitPi_ManyCells | Man page Source code |
| fitPi_SingleCell | Man page Source code |
| function | Man page |
| getFitsDispersion | Man page Source code |
| getFitsDropout | Man page Source code |
| getFitsMean | Man page Source code |
| getNormData | Man page Source code |
| getPostDrop | Man page Source code |
| initDispModel | Man page Source code |
| initDropModel | Man page Source code |
| initMuModel | Man page Source code |
| initialiseImpulseParameters | Man page Source code |
| lsDispModelConst | Man page Man page Source code |
| lsDispModelConst<- | Man page |
| lsDispModelH0 | Man page Man page Source code |
| lsDispModelH0<- | Man page |
| lsDispModelH0_NB | Man page Source code |
| lsDispModelH0_NB<- | Man page |
| lsDispModelH1 | Man page Man page Source code |
| lsDispModelH1<- | Man page |
| lsDispModelH1_NB | Man page Source code |
| lsDispModelH1_NB<- | Man page |
| lsDropModel | Man page Man page Source code |
| lsDropModel<- | Man page |
| lsFitConvergence | Man page Man page Source code |
| lsFitConvergence<- | Man page |
| lsMuModelConst | Man page Man page Source code |
| lsMuModelConst<- | Man page |
| lsMuModelH0 | Man page Man page Source code |
| lsMuModelH0<- | Man page |
| lsMuModelH0_NB | Man page Man page Source code |
| lsMuModelH0_NB<- | Man page |
| lsMuModelH1 | Man page Man page Source code |
| lsMuModelH1<- | Man page |
| lsMuModelH1_NB | Man page Man page Source code |
| lsMuModelH1_NB<- | Man page |
| main | Man page |
| matCountsProc | Man page Man page Source code |
| matCountsProc<- | Man page |
| matWeights | Man page Man page Source code |
| matWeights<- | Man page |
| names,LineagePulseObject-method | Man page |
| plotCellDensity | Man page Source code |
| plotGene | Man page Source code |
| processSCData | Man page Source code |
| runDEAnalysis | Man page Source code |
| runLineagePulse | Man page Source code |
| scaDFSplinesDisp | Man page Man page Source code |
| scaDFSplinesDisp<- | Man page |
| scaDFSplinesMu | Man page Man page Source code |
| scaDFSplinesMu<- | Man page |
| scaOmega | Man page Man page Source code |
| scaOmega<- | Man page |
| simulateContinuousDataSet | Man page Source code |
| sortGeneTrajectories | Man page Source code |
| strReport | Man page Man page Man page Source code Source code |
| strReport<- | Man page |
| strVersion | Man page Man page Source code |
| strVersion<- | Man page |
| testDropout | Man page Source code |
| vecAllGenes | Man page Man page Source code |
| vecAllGenes<- | Man page |
| vecConfoundersDisp | Man page Man page Source code |
| vecConfoundersDisp<- | Man page |
| vecConfoundersMu | Man page Man page Source code |
| vecConfoundersMu<- | Man page |
| vecH0Pop | Man page Man page Source code |
| vecH0Pop<- | Man page |
| vecNormConst | Man page Man page Source code |
| vecNormConst<- | Man page |
| wrapper, | Man page |
| writeReport | Man page Source code |
