plot.thresholdSCRNACountMatrix: Plot cutpoints and densities for thresholding

In MAST: Model-based Analysis of Single Cell Transcriptomics

Description

Plot cutpoints and densities for thresholding

Usage

## S3 method for class 'thresholdSCRNACountMatrix'
plot(x, ask = FALSE, wait.time = 0, type = "bin", indices = NULL, ...)

Arguments

x	output of thresholdSCRNACountMatrix
ask	if TRUE then will prompt before displaying each plot
wait.time	pause (in seconds) between each plot
type	one or more of the following: 'bin' (plot the genes by the binning used for thresholding), or 'gene' (plot thresholding by gene – see next argument)
indices	if type is equal to 'gene', and is a integer of length 1, then a random sample of indices genes is taken. If it is NULL, then 10 genes are sampled. If it is a integer vector of length > 1, then it is interpreted as giving a list of indices of genes to be displayed.
...	further arguments passed to plot

Value

displays plots

Examples

## See thresholdSCRNACountMatrix
example(thresholdSCRNACountMatrix)

MAST documentation built on Nov. 8, 2020, 8:19 p.m.