Man pages for MMDiff2
Statistical Testing for ChIP-Seq data sets
| Cfp1-Peaks | Peaks for Cfp1-data set |
| compDists | Compute distances between Peaks |
| compHists | Compute Peak histograms |
| compPvals | compute p-values |
| DBAmmd-Accessors | Extract data from DBAmmd objects |
| DBAmmd-class | Class DBAmmd |
| estimateFragmentCenters | estimate center of fragments |
| getPeakReads | Get reads from indexed bam files for defined regions |
| mm9-Genes | mm9-Genes |
| MMD | DBAmmd Object for Cfp1 example |
| myGeneric | Generics for DBAmmd-Class |
| plotDists | plotDists |
| plotDISTS4Peak | plotDISTS4Peak |
| plotPeak | plot Peak |
| reportResults | report results |
| runShinyMMDiff2 | Shiny Application for interactive visualization of MMD,GMD... |
| server.MMDiff2 | Shiny server code for interactive visualization of MMD... |
| ui.MMDiff2 | ui component for interactive visualization of MMD,GMD and... |
