mm9-Genes: mm9-Genes

Description Usage Format Examples

Description

Subset of Genes from the mm9 annotation that overlap with example Peaks in the Cfp1-Peaks file.

Usage

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data('mm9-Genes')

Format

contains, GR a GRanges object with 800 ranges

Examples

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# data was created as follows:
## Not run: 
data('Cfp1-Peaks')
library(TxDb.Mmusculus.UCSC.mm9.knownGene)
txdb <- TxDb.Mmusculus.UCSC.mm9.knownGene #shorthand (for convenience) txdb
GR <- transcripts(txdb)
ov <- findOverlaps(GR,Peaks)
GR <- GR[queryHits(ov)]
save(file = 'data/mm9-Genes.rData',GR)

## End(Not run)

MMDiff2 documentation built on May 31, 2017, 1:16 p.m.