Compute distances between Peaks
This function computes pairwise distances between histograms according to the dist.method (MMD, KS). For large data sets it is a bit time consuming.
DBAmmd Object. This Object can be created using
specify method used for distances between samples. Currently only Maximum Mean Discrepancy (MMD) and Kolmogorov-Smirnov (KS) implemented. (DEFAULT: 'MMD')
sigma parameter of the RBF kernel, determining the distance (along the genome) at which fragment counts decorrelate. If set to NULL, 100 random Peaks are used to determine sigma heuristically according to the method described in the MMDiff paper . (DEFUALT: NULL)
whether to run in parallel (currently no parallelization implemented) (DEFAULT: FALSE)
DBAmmd object with updated slot
Gabriele Schweikert G.Schweikert@ed.ac.uk
 Schweikert et al. BMC Genomics 2013 ...
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