report results

Description

retrieve results of differential binding analysis

Usage

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reportResults(MD, diff.method = "MMD.locfit", th = 0.1, whichContrast = 1,
  rm.oulier = TRUE, bUsePval = FALSE)

Arguments

MD

DBAmmd Object. This Object can be created using DBAmmd().

diff.method

method used to determine p-values and false discovery rates. Currently only 'MMD.locfit' implemented. (DEFAULT: 'MMD.locfit')

th

significance threshold for differential called peaks (DEFAULT: 0.1)

whichContrast

index determining which of the set contrast should be used. (DEFAULT: 1)

rm.oulier

if TRUE, significant peaks with high within-group distances are not reported. (DEFAULT: TRUE)

bUsePval

if TRUE p-values instead of FDRs are used (DEFAULT: FALSE)

Examples

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data("MMD")
res <- reportResults(MMD)