estimate center of fragments
This function computes average shifts between forward and reverse strand and applies it to estimate fragment centers.
DBAmmd Object. This Object can be created using
can be set if the offset between forward and reverse strand is known (e.g. 1/2 median fragment size). In this case shift will not be estimated (DEFAULT: NULL)
plot scatterplots for counts on forward vs reverse strand and histograms of determined shifts (DEFAULT: FALSE)
DBAmmd object with updated slots
1 2 3 4 5 6 7 8 9 10 11
Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.