Man pages for MMDiff2
Statistical Testing for ChIP-Seq data sets

Cfp1-PeaksPeaks for Cfp1-data set
compDistsCompute distances between Peaks
compHistsCompute Peak histograms
compPvalscompute p-values
DBAmmd-AccessorsExtract data from DBAmmd objects
DBAmmd-classClass DBAmmd
estimateFragmentCentersestimate center of fragments
getPeakReadsGet reads from indexed bam files for defined regions
mm9-Genesmm9-Genes
MMDDBAmmd Object for Cfp1 example
myGenericGenerics for DBAmmd-Class
plotDistsplotDists
plotDISTS4PeakplotDISTS4Peak
plotPeakplot Peak
reportResultsreport results
runShinyMMDiff2Shiny Application for interactive visualization of MMD,GMD...
server.MMDiff2Shiny server code for interactive visualization of MMD...
ui.MMDiff2ui component for interactive visualization of MMD,GMD and...
MMDiff2 documentation built on May 2, 2018, 2:04 a.m.