adjust_EB: Perform batch adjustment on standardized feature abundances,...
In MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

Perform batch adjustment on standardized feature abundances, based on EB shrinked per-batch location and scale parameters

1 2	adjust_EB(s_data, l_params_shrink, l_stand_feature, batchmod, n_batch, l_ind)

`s_data`	feature-by-sample matrix of standardized abundances.
`l_params_shrink`	list of shrinked parameters, as returned by fit_shrink.
`l_stand_feature`	list of per-feature standardization fits, as returned by fit_stand_feature.
`batchmod`	design matrix for batch variables.
`n_batch`	number of batches in the data.
`l_ind`	list of indicator matrices, as returned by construct_ind.

feature-by-sample matrix of batch-adjusted feature abundances.

MMUPHin documentation built on April 9, 2021, 6:01 p.m.

MMUPHin index

Performing meta-analyses of microbiome studies with MMUPHin

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description