check_feature_abd: Check feature abundance table
In MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
Description
Usage
Arguments
Value
Description
Given a feature abundance table, make sure that a) it has no missing values,
b) all values are non-negative, c) it is either proportions (all no greater
than 1) or counts (all integers).
Usage
1
check_feature_abd(feature_abd)
Arguments
feature_abd
feature-by-sample matrix of abundances (proportions or
counts).
Value
returns an error if any of the check fails. Otherwise either "counts"
or "proportions"
MMUPHin documentation built on April 9, 2021, 6:01 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Given a feature abundance table, make sure that a) it has no missing values, b) all values are non-negative, c) it is either proportions (all no greater than 1) or counts (all integers).
Usage
1 | check_feature_abd(feature_abd)
|
Arguments
feature_abd |
feature-by-sample matrix of abundances (proportions or counts). |
Value
returns an error if any of the check fails. Otherwise either "counts" or "proportions"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.