rma_wrapper: Wrapper for fitting fixed/random effects meta-analysis model...
In MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

Wrapper for fitting fixed/random effects meta-analysis model using metafor

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rma_wrapper(maaslin_fits, method = "REML", output = tempdir(),
  forest_plot = NULL, rma_conv = 1e-06, rma_maxit = 1000,
  verbose = TRUE)

`maaslin_fits`	list of Maaslin2 result data frames, outputted from Maaslin2_wrapper.
`method`	meta-analysis model to run, options provided in metafor::rma.
`output`	directory for the output forest plots.
`forest_plot`	logical. should forest plots be generated for the significant associations.
`rma_conv`	rma threshold control.
`rma_maxit`	rma maximum iteration control.
`verbose`	should verbose information be printed.

a data frame recording per-feature meta-analysis association results. (coefficients, p-values, etc.)

MMUPHin documentation built on April 9, 2021, 6:01 p.m.

MMUPHin index

Performing meta-analyses of microbiome studies with MMUPHin

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