normalize_features: Normalize feature abundance table (modified from Maaslin2)
In MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
Description
Usage
Arguments
Value
Description
Normalize feature abundance table (modified from Maaslin2)
Usage
1
normalize_features(features, normalization = "NONE", pseudo_count = 0)
Arguments
features
feature-by-sample matrix of abundances (proportions or
counts).
normalization
normalization method.
pseudo_count
pseudo count to be added to feature_abd.
Value
normalized abundance table.
MMUPHin documentation built on April 9, 2021, 6:01 p.m.
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Description Usage Arguments Value
Description
Normalize feature abundance table (modified from Maaslin2)
Usage
1 | normalize_features(features, normalization = "NONE", pseudo_count = 0)
|
Arguments
features |
feature-by-sample matrix of abundances (proportions or counts). |
normalization |
normalization method. |
pseudo_count |
pseudo count to be added to feature_abd. |
Value
normalized abundance table.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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