API for MSstatsConvert
Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format
| Global functions | |
|---|---|
| .MSstatsFormat | Man page Source code |
| .addFractions | Man page Source code |
| .adjustIntensities | Man page Source code |
| .aggregatePSMstoPeptideIons | Man page Source code |
| .checkAnnotation | Man page Source code |
| .checkDDA | Man page Source code |
| .checkDuplicatedMeasurements | Man page Source code |
| .checkMSstatsParams | Man page Source code |
| .checkMultiRun | Man page Source code |
| .checkOverlappedFeatures | Man page Source code |
| .cleanByFeature | Man page Source code |
| .cleanRawDIAUmpire | Man page Source code |
| .cleanRawMaxQuant | Man page Source code |
| .cleanRawOpenMS | Man page Source code |
| .cleanRawOpenSWATH | Man page Source code |
| .cleanRawPD | Man page Source code |
| .cleanRawPDMSstats | Man page Source code |
| .cleanRawPDTMT | Man page Source code |
| .cleanRawProgenesis | Man page Source code |
| .cleanRawSkyline | Man page Source code |
| .cleanRawSpectroMineTMT | Man page Source code |
| .cleanRawSpectronaut | Man page Source code |
| .combine | Source code |
| .countCommonFeatures | Man page Source code |
| .fillValues | Man page Source code |
| .filterByPattern | Man page Source code |
| .filterByScore | Man page Source code |
| .filterExact | Man page Source code |
| .filterFewMeasurements | Man page Source code |
| .filterManyColumns | Man page Source code |
| .filterOverlapped | Man page Source code |
| .findAvailable | Man page Source code |
| .fixColumnTypes | Man page Source code |
| .fixMissingValues | Man page Source code |
| .getChannelColumns | Man page Source code |
| .getCorrectFraction | Man page Source code |
| .getDataTable | Man page Source code |
| .getFullDesign | Man page Source code |
| .getMissingRunsPerFeature | Man page Source code |
| .getOverlappingFeatures | Man page Source code |
| .handleFiltering | Man page Source code |
| .handleFractions | Man page Source code |
| .handleFractionsLF | Man page Source code |
| .handleFractionsTMT | Man page Source code |
| .handleIsotopicPeaks | Man page Source code |
| .handleSharedPeptides | Man page Source code |
| .handleSingleFeaturePerProtein | Man page Source code |
| .logConverterOptions | Man page Source code |
| .logSuccess | Man page Source code |
| .makeBalancedDesign | Man page Source code |
| .makeExactFilterMessage | Man page Source code |
| .makeScoreFilterMessage | Man page Source code |
| .mergeAnnotation | Man page Source code |
| .nullAppender | Man page Source code |
| .onLoad | Man page Source code |
| .removeOverlappingFeatures | Man page Source code |
| .removeSharedPeptides | Man page Source code |
| .selectMSstatsColumns | Man page Source code |
| .standardizeColnames | Man page Source code |
| .summarizeMultipleMeasurements | Man page Source code |
| .summarizeMultiplePSMs | Man page Source code |
| MSstatsBalancedDesign | Man page Source code |
| MSstatsClean | Man page |
| MSstatsClean,MSstatsDIAUmpireFiles-method | Man page |
| MSstatsClean,MSstatsMaxQuantFiles-method | Man page |
| MSstatsClean,MSstatsOpenMSFiles-method | Man page |
| MSstatsClean,MSstatsOpenSWATHFiles-method | Man page |
| MSstatsClean,MSstatsProgenesisFiles-method | Man page |
| MSstatsClean,MSstatsProteomeDiscovererFiles-method | Man page |
| MSstatsClean,MSstatsSkylineFiles-method | Man page |
| MSstatsClean,MSstatsSpectroMineFiles-method | Man page |
| MSstatsClean,MSstatsSpectronautFiles-method | Man page |
| MSstatsConvert | Man page |
| MSstatsDIAUmpireFiles-class | Man page |
| MSstatsImport | Man page Source code |
| MSstatsInputFiles-class | Man page |
| MSstatsLogsSettings | Man page Source code |
| MSstatsMakeAnnotation | Man page Source code |
| MSstatsMaxQuantFiles-class | Man page |
| MSstatsOpenMSFiles-class | Man page |
| MSstatsOpenSWATHFiles-class | Man page |
| MSstatsPreprocess | Man page Source code |
| MSstatsProgenesisFiles-class | Man page |
| MSstatsProteomeDiscovererFiles-class | Man page |
| MSstatsSaveSessionInfo | Man page Source code |
| MSstatsSkylineFiles-class | Man page |
| MSstatsSpectroMineFiles-class | Man page |
| MSstatsSpectronautFiles-class | Man page |
| getDataType | Man page |
| getDataType,MSstatsInputFiles-method | Man page |
| getInputFile | Man page |
| getInputFile,MSstatsInputFiles-method | Man page |
