dot-filterExact: Filter out specified symbols.

In MSstatsConvert: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format

Description

Filter out specified symbols.

Usage

.filterExact(
  input,
  col_name,
  filter_symbols,
  behavior,
  fill_value,
  filter,
  drop
)

Arguments

input	data.table preprocessed by one of the .cleanRaw* functions.
col_name	chr, name of the column that will be the base for filtering
filter_symbols	character vector of symbols that will be removed
behavior	chr, if "remove", values below/above the threshold will be removed, if "replace", they will be set to fill_value.
fill_value	if behavior = "replace", values below/above the threshold will be replaced with fill_value. Defaults to NA.
filter	lgl, if TRUE, decoy proteins will be removed from the data.
drop	lgl, if TRUE, column that contains decoy proteins will be dropped.

Value

data.table

MSstatsConvert documentation built on Nov. 8, 2020, 5:49 p.m.