dot-cleanRawPDTMT: Clean raw TMT data from Proteome Discoverer
In MSstatsConvert: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format
Description
Usage
Arguments
Value
Description
Clean raw TMT data from Proteome Discoverer
Usage
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.cleanRawPDTMT(
msstats_object,
remove_shared = TRUE,
remove_protein_groups = TRUE,
protein_id_column = "ProteinAccessions",
intensity_columns_regexp = "Abundance"
)
Arguments
msstats_object
an object of class MSstatsSpectroMineFiles.
remove_shared
lgl, if TRUE, shared peptides will be removed.
remove_protein_groups
if TRUE, proteins with numProteins > 1 will be removed.
protein_id_column
chr, name of a column with protein IDs.
intensity_columns_regexp
regular expressions that defines intensity columns.
Defaults to "Abundance", which means that columns that contain the word "Abundance"
will be treated as corresponding to intensities for different channels.
Value
data.table
MSstatsConvert documentation built on Nov. 8, 2020, 5:49 p.m.
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Description Usage Arguments Value
Description
Clean raw TMT data from Proteome Discoverer
Usage
1 2 3 4 5 6 7 | .cleanRawPDTMT(
msstats_object,
remove_shared = TRUE,
remove_protein_groups = TRUE,
protein_id_column = "ProteinAccessions",
intensity_columns_regexp = "Abundance"
)
|
Arguments
msstats_object |
an object of class |
remove_shared |
lgl, if TRUE, shared peptides will be removed. |
remove_protein_groups |
if TRUE, proteins with numProteins > 1 will be removed. |
protein_id_column |
chr, name of a column with protein IDs. |
intensity_columns_regexp |
regular expressions that defines intensity columns. Defaults to "Abundance", which means that columns that contain the word "Abundance" will be treated as corresponding to intensities for different channels. |
Value
data.table
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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