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README.md
In MSstatsConvert: Import Data from Various Mass Spectrometry Signal Processing Tools to MSstats Format
MSstats development version
MSstats is an R-based/Bioconductor package for statistical relative quantification of peptides and proteins in mass spectrometry-based proteomic experiments.
It is applicable to multiple types of sample preparation, including label-free workflows, workflows that use stable isotope labeled reference proteins and peptides, and workflows that use fractionation.
It is applicable to targeted Selected Reactin Monitoring(SRM), Data-Dependent Acquisiton(DDA or shotgun), and Data-Independent Acquisition(DIA or SWATH-MS).
This package implements converter functions that are used by MSstats to import data from various signal processing tools.
Installation
This development version is only available on Github:
devtools::install_github("Vitek-Lab/MSstatsConvert", build_vignettes = TRUE)
Documentation and examples
An extensive documentation can be found on the official website of the package.
Contributing
We welcome contributions from the community. For details on how to contribute to the
development of MSsstas, please refer to the CONTRIBUTING file.
License
Try the MSstatsConvert package in your browser
Any scripts or data that you put into this service are public.
MSstatsConvert documentation built on Nov. 8, 2020, 5:49 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
MSstats development version
MSstats is an R-based/Bioconductor package for statistical relative quantification of peptides and proteins in mass spectrometry-based proteomic experiments. It is applicable to multiple types of sample preparation, including label-free workflows, workflows that use stable isotope labeled reference proteins and peptides, and workflows that use fractionation. It is applicable to targeted Selected Reactin Monitoring(SRM), Data-Dependent Acquisiton(DDA or shotgun), and Data-Independent Acquisition(DIA or SWATH-MS). This package implements converter functions that are used by MSstats to import data from various signal processing tools.
Installation
This development version is only available on Github:
devtools::install_github("Vitek-Lab/MSstatsConvert", build_vignettes = TRUE)
Documentation and examples
An extensive documentation can be found on the official website of the package.
Contributing
We welcome contributions from the community. For details on how to contribute to the development of MSsstas, please refer to the CONTRIBUTING file.
License
Try the MSstatsConvert package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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