Change labels for missing values
.fixMissingValues(input, fix_missing = NULL)
output of MSstatsPreprocess
missing values can be labeled by NA, 0 or both.
If NULL, data were processed by Skyline, so missing values will be denoted
by both NA and 0. If "na_to_zero", NA values will be replaced by 0.
If "zero_to_na", 0 values will be replaced by NA
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