Man pages for MesKit
A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic alterations

calFstcalFst
calJSIcompareJSI
calNeiDistcalNeiDist
ccfAUCccfAUC
classifyMutclassifyMut
cna2genecna2gene
compareCCFcompareCCF
compareTreecompareTree
fitSignaturesfitSignatures
getBinaryMatrixgetBinaryMatrix
getBootstrapValuegetBootstrapValue
getBranchTypegetBranchType
getCCFMatrixgetCCFMatrix
getMafDatagetMafData
getMafPatientgetMafPatient
getMafRefgetMafRef
getMutBranchesgetMutBranches
getNonSyn_vcgetNonSyn_vc
getPhyloTreegetPhyloTree
getPhyloTreePatientgetPhyloTreePatient
getPhyloTreeRefgetPhyloTreeRef
getPhyloTreeTsbLabelgetPhyloTreeRef
getSampleInfogetSampleInfo
getTreegetTree
getTreeMethodgetTreeMethod
Maf-classMaf class
MafList-classMafList class
mathScoremathScore
mutClustermutCluster
mutHeatmapmutHeatmap
mutTrunkBranchmutTrunkBranch
phyloTree-classphyloTree class
phyloTreeList-classphyloTreeList class
plotCNAplotCNA
plotMutProfileplotMutProfile
plotMutSigProfileplotMutSigProfile
plotPhyloTreeplotPhyloTree
readMafreadMaf
readSegmentreadSegment
runMesKitRun the default MesKit app for analysis locally
subMafSubset Maf object
testNeutraltestNeutral
triMatrixtriMatrix
MesKit documentation built on March 28, 2021, 6 p.m.