S4 class for storing informations about phylogenetic tree.
a object of class "phylo".
a numeric vector of bootstrap values.
approach to construct a phylogenetic tree.
a presense/absent binary matrix of mutations.
a ccf matrix of mutations.
a data.frame of mutations per trunk/branch.
a data.frame of trunk/branch types based on shared pattern.
human reference genome version. Default: 'hg19'. Optional: 'hg18' or 'hg38'.
store relationship between Tumor_Sample_Barcode and Tumor_Sample_Label if Tumor_Sample_Label is provided in clinical data.
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