getNonSyn_vc: getNonSyn_vc
In MesKit: A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic alterations
Description
Usage
Arguments
Value
Examples
Description
getNonSyn_vc
Usage
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getNonSyn_vc(object)
## S4 method for signature 'Maf'
getNonSyn_vc(object)
Arguments
object
An object of Maf
Value
A list of Variant classifications which are considered as non-silent.
Examples
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maf.File <- system.file("extdata/", "CRC_HZ.maf", package = "MesKit")
clin.File <- system.file("extdata/", "CRC_HZ.clin.txt", package = "MesKit")
ccf.File <- system.file("extdata/", "CRC_HZ.ccf.tsv", package = "MesKit")
maf <- readMaf(mafFile=maf.File, clinicalFile = clin.File, ccfFile=ccf.File, refBuild="hg19")
getNonSyn_vc(maf$V402)
MesKit documentation built on March 28, 2021, 6 p.m.
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Description Usage Arguments Value Examples
Description
getNonSyn_vc
Usage
1 2 3 4 | getNonSyn_vc(object)
## S4 method for signature 'Maf'
getNonSyn_vc(object)
|
Arguments
object |
An object of Maf |
Value
A list of Variant classifications which are considered as non-silent.
Examples
1 2 3 4 5 | maf.File <- system.file("extdata/", "CRC_HZ.maf", package = "MesKit")
clin.File <- system.file("extdata/", "CRC_HZ.clin.txt", package = "MesKit")
ccf.File <- system.file("extdata/", "CRC_HZ.ccf.tsv", package = "MesKit")
maf <- readMaf(mafFile=maf.File, clinicalFile = clin.File, ccfFile=ccf.File, refBuild="hg19")
getNonSyn_vc(maf$V402)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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