Maf-class: Maf class
In MesKit: A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic alterations
Description
Maf class.
Slots
datadata.table of MAF file containing somatic mutations.
sample.infodata.frame of sample information per patient.
nonSyn.vclist of variant classifications which are considered as non-silent.
Default NULL, use Variant Classifications with "Frame_Shift_Del", "Frame_Shift_Ins", "Splice_Site", "Translation_Start_Site", "Nonsense_Mutation", "Nonstop_Mutation", "In_Frame_Del", "In_Frame_Ins", "Missense_Mutation"
ref.buildhuman reference genome version. Default 'hg19'. Optional: 'hg18' or 'hg38'.
MesKit documentation built on March 28, 2021, 6 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Maf class.
Slots
datadata.table of MAF file containing somatic mutations.
sample.infodata.frame of sample information per patient.
nonSyn.vclist of variant classifications which are considered as non-silent. Default NULL, use Variant Classifications with "Frame_Shift_Del", "Frame_Shift_Ins", "Splice_Site", "Translation_Start_Site", "Nonsense_Mutation", "Nonstop_Mutation", "In_Frame_Del", "In_Frame_Ins", "Missense_Mutation"
ref.buildhuman reference genome version. Default 'hg19'. Optional: 'hg18' or 'hg38'.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.