getMafData: getMafData
In MesKit: A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic alterations
Description
Usage
Arguments
Value
Examples
Description
getMafData
Usage
1
2
3
4
getMafData(object)
## S4 method for signature 'Maf'
getMafData(object)
Arguments
object
An object of Maf
Value
Maf data
Examples
1
2
3
4
5
maf.File <- system.file("extdata/", "CRC_HZ.maf", package = "MesKit")
clin.File <- system.file("extdata/", "CRC_HZ.clin.txt", package = "MesKit")
ccf.File <- system.file("extdata/", "CRC_HZ.ccf.tsv", package = "MesKit")
maf <- readMaf(mafFile=maf.File, clinicalFile = clin.File, ccfFile=ccf.File, refBuild="hg19")
getMafData(maf$V402)
MesKit documentation built on March 28, 2021, 6 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
getMafData
Usage
1 2 3 4 | getMafData(object)
## S4 method for signature 'Maf'
getMafData(object)
|
Arguments
object |
An object of Maf |
Value
Maf data
Examples
1 2 3 4 5 | maf.File <- system.file("extdata/", "CRC_HZ.maf", package = "MesKit")
clin.File <- system.file("extdata/", "CRC_HZ.clin.txt", package = "MesKit")
ccf.File <- system.file("extdata/", "CRC_HZ.ccf.tsv", package = "MesKit")
maf <- readMaf(mafFile=maf.File, clinicalFile = clin.File, ccfFile=ccf.File, refBuild="hg19")
getMafData(maf$V402)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.