getPhyloTreeRef: getPhyloTreeRef

Description Usage Arguments Value Examples

Description

getPhyloTreeRef

Usage

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getPhyloTreeRef(object)

## S4 method for signature 'phyloTree'
getPhyloTreeRef(object)

## S4 method for signature 'phyloTree'
getPhyloTreeTsbLabel(object)

Arguments

object

An object of phyloTree

Value

Reference genome versions of phyloTree

Examples

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maf.File <- system.file("extdata/", "CRC_HZ.maf", package = "MesKit")
clin.File <- system.file("extdata/", "CRC_HZ.clin.txt", package = "MesKit")
ccf.File <- system.file("extdata/", "CRC_HZ.ccf.tsv", package = "MesKit")
maf <- readMaf(mafFile=maf.File, clinicalFile = clin.File, ccfFile=ccf.File, refBuild="hg19")
phyloTree <- getPhyloTree(maf)
getPhyloTreeRef(phyloTree$V402)

MesKit documentation built on March 28, 2021, 6 p.m.