API for MetaboSignal
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
| Global functions | |
|---|---|
| From_geneID_to_symbol | Source code |
| MS2_mergeNetworks | Man page Source code |
| MS2_ppiNetwork | Man page Source code |
| MS_FindCompound | Source code |
| MS_FindOrganism | Source code |
| MS_FindPathway | Source code |
| MS_changeNames | Man page Source code |
| MS_convertGene | Man page Source code |
| MS_distances | Man page Source code |
| MS_exportCytoscape | Man page Source code |
| MS_findMappedNodes | Man page Source code |
| MS_getPathIds | Man page Source code |
| MS_interactionType | Source code |
| MS_keggFinder | Man page Source code |
| MS_keggNetwork | Man page Source code |
| MS_nodeBW | Man page Source code |
| MS_reactionNetwork | Man page Source code |
| MS_removeDrugs | Man page Source code |
| MS_removeNode | Man page Source code |
| MS_replaceNode | Man page Source code |
| MS_shortestPaths | Man page Source code |
| MS_shortestPathsNetwork | Man page Source code |
| MS_tissueFilter | Man page Source code |
| MS_topologyFilter | Man page Source code |
| Match | Source code |
| MetaboSignal_table | Man page |
| add_reaction_edge | Source code |
| build_RG_edge | Source code |
| build_signal_edges | Source code |
| check_matrix_v2 | Source code |
| check_mode_type | Source code |
| collapse_interactions | Source code Source code |
| conv_entrez_kegg | Source code |
| conv_entrez_symbol | Source code |
| convertTable | Source code |
| cyto_directionality | Source code |
| directionality_reactions | Man page |
| find_autoedges | Source code |
| find_node_index | Source code |
| gene_SP_v2 | Source code |
| get_interactiontype | Source code Source code |
| get_metabonet | Source code |
| get_metabonetR | Source code |
| get_molecule_type | Source code |
| get_reaction_type | Source code |
| get_signaling_type | Source code |
| get_signalnet | Source code |
| get_source | Source code |
| get_tissue_level | Source code |
| hpaNormalTissue | Man page |
| igraph_edited | Source code |
| keggNet_example | Man page |
| kegg_pathways | Man page |
| link_hsagene_ensembl | Source code |
| link_kogene | Source code |
| link_reaction_gene | Source code |
| map_interactions | Source code |
| match_KEGG | Source code |
| merge_interactions | Source code |
| mergedNet_example | Man page |
| metabolic_matrix | Source code |
| metabolite_SP | Source code |
| network_features | Source code |
| network_names | Source code |
| path_as_network | Source code |
| ppiNet_example | Man page |
| regulatory_interactions | Man page |
| signaling_matrix | Source code |
