Man pages for MethTargetedNGS
Perform Methylation Analysis on Next Generation Sequencing Data
| bconv | Convert non-bisulfite sequences to bisulfite sequences. |
| compare_samples | Complete Methylation Analysis of Next Generation Sequencing... |
| fishertest_cpg | Perform Fisher Exact Test on Methylation Data. |
| hmmbuild | Create Profile Hidden Markov Model of given aligned sequences |
| methAlign | Align sequences with the reference sequence using... |
| methAvg | Calculate Methylation Average of given methylation matrix |
| methEntropy | Calculate Methylation Entropy |
| methHeatmap | Generate Heatmap of the given methylation data. |
| MethTargetedNGS-package | Methylation Analysis of Next Generation Sequencing data. |
| nhmmer | Calculate likelihood of the given profile hidden markov model... |
| odd_ratio | Calculate log odd ratio of the given samples (healthy/tumor) |
