MinDistGRanges: Constructor for 'MinDistGRanges' class

In MinimumDistance: A Package for De Novo CNV Detection in Case-Parent Trios

Description

The MinDistGRanges class contains the segmentation of the father, mother, offspring, and the minimum distance for each possible parent-offspring trio. For the parents, the segmentation results are expected to be in GRanges format. To accomodate multiple-offspring families, both the offspring segments and minimum distance segments should be of class GRangesList where the length of the list corresponds to the number of offspring.

Usage

MinDistGRanges(
  mindist = GRangesList(),
  offspring = GRangesList(),
  father = GRanges(),
  mother = GRanges(),
  pedigree = ParentOffspring()
)

Arguments

mindist	a GRangesList object
offspring	a GRangesList object
father	a GRanges object
mother	a GRanges object
pedigree	a ParentOffspring object

Examples

MinDistGRanges()

MinimumDistance documentation built on Nov. 8, 2020, 11:11 p.m.