MinDistGRanges: Constructor for 'MinDistGRanges' class

Description Usage Arguments Examples

View source: R/methods-MinDistGRanges.R

Description

The MinDistGRanges class contains the segmentation of the father, mother, offspring, and the minimum distance for each possible parent-offspring trio. For the parents, the segmentation results are expected to be in GRanges format. To accomodate multiple-offspring families, both the offspring segments and minimum distance segments should be of class GRangesList where the length of the list corresponds to the number of offspring.

Usage

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MinDistGRanges(
  mindist = GRangesList(),
  offspring = GRangesList(),
  father = GRanges(),
  mother = GRanges(),
  pedigree = ParentOffspring()
)

Arguments

mindist

a GRangesList object

offspring

a GRangesList object

father

a GRanges object

mother

a GRanges object

pedigree

a ParentOffspring object

Examples

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MinimumDistance documentation built on Nov. 8, 2020, 11:11 p.m.