filterExperiment: Methods for filtering MinDistExperiment objects

Description Usage Arguments Value

Description

Filter a MinDistExperiment object to exclude markers with missing values in the low-level summaries, exclude markers that lie in segments (granges argument) with small minimum distance values (unlikely to be de novo)

Usage

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filterExperiment(object, granges, param)

## S4 method for signature 'MinDistExperiment,GRanges'
filterExperiment(object, granges, param)

## S4 method for signature 'MinDistExperiment,GRangesList'
filterExperiment(object, granges, param)

## S4 method for signature 'MinDistExperiment,MinDistGRanges'
filterExperiment(object, granges, param)

Arguments

object

A MinDistExperiment

granges

A GRanges, GRangesList, or MinDistGRanges object

param

a MinDistParam object

Value

a MinDistExperiment


MinimumDistance documentation built on Nov. 8, 2020, 11:11 p.m.