TrioSetListLD: Deprecated TrioSetList constructor for large data
In MinimumDistance: A Package for De Novo CNV Detection in Case-Parent Trios

Description Usage Arguments Value See Also

The TrioSetListLD constructor uses ff objects to handle large datasets. This function is defunct. Use MinDistExperiment instead.

TrioSetListLD(
  path,
  fnames,
  ext = "",
  samplesheet,
  row.names,
  pedigreeData,
  featureData,
  annotationPkg,
  outdir = ldPath(),
  ffprefix = "",
  genome = c("hg19", "hg18")
)

`path`	Path to plain-text files containing log R ratios and B allele frequencies. Files should contain data for a single sample.
`fnames`	Character string providing filenames.
`ext`	Character string indicating whether the `fnames` has a file extension (e.g., ".txt")
`samplesheet`	(Optional) `data.frame` containing phenotypic / experimental covariates on the samples. Note that if `samplesheet` is provided, `row.names` must be specified.
`row.names`	Character vector indicating the sample id for each row in `samplesheet`. `row.names` should be unique and, ideally, correspond to `fnames`
`pedigreeData`	An object of class `Pedigree`.
`featureData`	A `GenomeAnnotatedDataFrame`
`annotationPkg`	Character string indicating the annotation package used to extract information on the features (chromosome, physical position, and whether the feature is polymorphic ('isSnp')).
`outdir`	Character string indicating the path for storing `ff` objects. Ignored if the ff package is not loaded.
`ffprefix`	Character string indicating the prefix used to name ff objects. Ignored if the ff package is not loaded.
`genome`	character string indicating UCSC genome build. Only "hg19" is allowed for annotation packages that support a single build. Supported builds for most platforms are "hg18" and "hg19".