Pedigree-class: Deprecated class for storing pedigree data

In MinimumDistance: A Package for De Novo CNV Detection in Case-Parent Trios

Description

Deprecated class for storing pedigree data

Usage

## S4 method for signature 'Pedigree'
trios(object)

## S4 method for signature 'Pedigree'
offspringNames(object)

## S4 method for signature 'Pedigree'
show(object)

## S4 method for signature 'Pedigree,ANY,ANY,ANY'
x[i, j, ..., drop = FALSE]

## S4 method for signature 'Pedigree'
dim(x)

Arguments

object	a Pedigree object
x	a Pedigree object
i	a numeric vector for subsetting (optional)
j	ignored
...	ignored
drop	ignored

Slots

trios

a data.frame with colnames 'F', 'M', and 'O' containing sample identifiers for the father (F), mother (M), and offspring (O).

trioIndex

a data.frame

MinimumDistance documentation built on Nov. 8, 2020, 11:11 p.m.