MinDistParam-class: Class and methods for parameters of minimum distance...

In MinimumDistance: A Package for De Novo CNV Detection in Case-Parent Trios

Description

Contains parameters used for circular binary segmentation (package DNAcopy), parameters in the PennCNV hidden Markov model, and parameters used for computing emission probabilities.

Usage

## S4 method for signature 'MinDistParam'
nMAD(object)

## S4 replacement method for signature 'MinDistParam,numeric'
nMAD(object) <- value

## S4 method for signature 'MinDistParam'
show(object)

## S4 method for signature 'DNAcopyParam'
show(object)

Arguments

object	a MinDistParam object
value	a length-one numeric vector.

Slots

nMAD

a length-one numeric vector

dnacopy

an object of class DNAcopyParam

penncnv

an object of class PennParam

emission

an object of class EmissionParam

thin

a length-one non-negative integer

MinimumDistance documentation built on Nov. 8, 2020, 11:11 p.m.