TrioSet: Deprecated constructor for 'TrioSet' class

In MinimumDistance: A Package for De Novo CNV Detection in Case-Parent Trios

Description

The TrioSet class has been deprecated and may be removed in a future release.

Usage

TrioSet(
  pedigreeData = Pedigree(),
  sample.sheet,
  row.names = NULL,
  lrr,
  baf,
  featureData,
  cdfname,
  drop = TRUE,
  mindist = NULL,
  genome = c("hg19", "hg18")
)

Arguments

pedigreeData	an object of class Pedigree
sample.sheet	a data.frame containing metadata on the trios
row.names	a character vector providing row identifiers for the sample.sheet argument that match the names of the trios in the pedigreeData argument.
lrr	a matrix of log R ratios
baf	a matrix of B allele frequencies
featureData	a GenomeAnnotatedDataFrame object for the SNPs/nonpolymorphic markers
cdfname	character string indicating the annotation package used to extract physical position and chromosome of markers
drop	logical. When FALSE, the dimnames on the log R ratio and BAF arrays is set to NULL
mindist	can be either NULL or a matrix of the minimum distance
genome	character string providing the UCSC genome build

Value

TrioSet

MinimumDistance documentation built on Nov. 8, 2020, 11:11 p.m.