Global functions | |
---|---|
&,filters,filters-method | Man page |
.onAttach | Source code |
FOXA | Man page |
FOXA1_rGADEM | Man page |
[,motiv,ANY,ANY,ANY-method | Man page |
[,motiv,ANY,ANY-method | Man page |
[,motiv-method | Man page |
addLetter | Source code |
alignments-class | Man page |
as.data.frame | Man page |
as.data.frame,motiv-method | Man page |
as.data.frame-methods | Man page |
combineMotifs | Man page |
combineMotifs,motiv,filters-method | Man page |
combineMotifs,motiv,list-method | Man page |
combineMotifs-method | Man page |
cooccurences | Man page Source code |
exportAsGRanges | Man page |
exportAsRangedData | Man page |
exportAsTransfacFile | Man page |
exportAsTransfacFile,list-method | Man page |
exportAsTransfacFile,motiv-method | Man page |
exportAsTransfacFile-methods | Man page |
filter | Man page |
filter,motiv,filters-method | Man page |
filter,motiv,list-method | Man page |
filter-class | Man page |
filter-methods | Man page |
gadem | Man page |
generateDBScores | Man page |
getGademPWM | Man page |
getPWM | Man page |
getPWM,motiv-method | Man page |
getPWM-methods | Man page |
getSeqID | Source code |
jaspar | Man page |
jaspar.scores | Man page |
length,motiv-method | Man page |
letterA | Source code |
letterC | Source code |
letterG | Source code |
letterT | Source code |
makePWM | Man page Source code |
matches-class | Man page |
motifCutree | Man page Source code |
motifDistances | Man page |
motifHclust | Man page Source code |
motifMatch | Man page |
motiv | Man page |
motiv-class | Man page |
names,filter-method | Man page |
names,filters-method | Man page |
names,motiv-method | Man page |
names<-,motiv-method | Man page |
occurences | Man page Source code |
plot | Man page |
plot,motiv,ANY-method | Man page |
plot,motiv,gadem-method | Man page Man page |
plot,motiv-method | Man page |
plot-methods | Man page |
plotDistributionDensity | Source code |
plotMotif | Source code |
pwm2cons | Source code |
pwm2ic | Source code |
readDBScores | Man page |
readGademPWMFile | Man page |
readPWMfile | Man page Source code |
seqLogo2 | Man page Source code |
setFilter | Man page |
show,filter-method | Man page |
show,motiv-method | Man page |
similarity | Man page |
similarity,list-method | Man page |
similarity,motiv-method | Man page |
split,motiv,filters-method | Man page |
split,motiv,list-method | Man page |
split-methods | Man page |
splitMotiv | Source code |
summary,filter-method | Man page |
summary,filters-method | Man page |
summary,list-method | Man page |
summary,motiv-method | Man page |
transcriptionFactor-class | Man page |
trimPWMedge | Man page Source code |
viewAlignments | Man page |
viewMotifs | Man page |
viewMotifs,motiv-method | Man page |
viewMotifs-methods | Man page |
writeDBScores | Man page |
x2ic | Source code |
|,filters,filters-method | Man page |
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