motiv-methods: Motiv methods

Description Usage Arguments Author(s) See Also Examples

Description

Methods for motiv objects.

Usage

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	 ## S4 method for signature 'motiv'
summary(object) 
	 ## S4 method for signature 'motiv'
names(x)
	 ## S4 method for signature 'motiv'
length(x)
	 ## S4 method for signature 'motiv'
similarity(x)
	 ## S4 method for signature 'motiv'
x[i,j=ANY, bysim=TRUE, ...,exact=TRUE, ignore.case=FALSE, drop=FALSE]

Arguments

object

An object of class motiv.

x

An object of class motiv.

i

A string reprsenting a motif name.

j

NOT USED.

bysim

If TRUE, select by similarity name.

...

Further potential arguments passed to methods.

ignore.case

if FALSE, the pattern matching is case sensitive and if TRUE, case is ignored during matching

exact

If TRUE, search only for perfect name match.

drop

If TRUE, no match motifs will be dropped.

Author(s)

Eloi Mercier <emercier@chibi.ubc.ca>

See Also

matches , alignments, tf

Examples

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showClass("motiv")

MotIV documentation built on April 28, 2020, 6:51 p.m.