motifOccurences: Motifs Occurences and Co-occurences

Description Usage Arguments Value Author(s) Examples

Description

Get the number of motifs occurences and co-occurences from a rGADEM object.

Usage

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Arguments

gadem

An object of type rGADEM.

x

A contingency table.

Value

occurences returns the contingency table of the number of motifs per sequences.

This object can be put in cooccurences to return the number of sequences where two motifs appear together.

Author(s)

Eloi Mercier <emercier@chibi.ubc.ca>

Examples

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data("FOXA1_rGADEM")
oc <- occurences (gadem)
coc <- cooccurences (oc)
coc

MotIV documentation built on April 28, 2020, 6:51 p.m.