API for MotIV
Motif Identification and Validation

Global functions
&,filters,filters-method Man page
.onAttach Source code
FOXA Man page
FOXA1_rGADEM Man page
[,motiv,ANY,ANY,ANY-method Man page
[,motiv,ANY,ANY-method Man page
[,motiv-method Man page
addLetter Source code
alignments-class Man page
as.data.frame Man page
as.data.frame,motiv-method Man page
as.data.frame-methods Man page
combineMotifs Man page
combineMotifs,motiv,filters-method Man page
combineMotifs,motiv,list-method Man page
combineMotifs-method Man page
cooccurences Man page Source code
exportAsGRanges Man page
exportAsRangedData Man page
exportAsTransfacFile Man page
exportAsTransfacFile,list-method Man page
exportAsTransfacFile,motiv-method Man page
exportAsTransfacFile-methods Man page
filter Man page
filter,motiv,filters-method Man page
filter,motiv,list-method Man page
filter-class Man page
filter-methods Man page
gadem Man page
generateDBScores Man page
getGademPWM Man page
getPWM Man page
getPWM,motiv-method Man page
getPWM-methods Man page
getSeqID Source code
jaspar Man page
jaspar.scores Man page
length,motiv-method Man page
letterA Source code
letterC Source code
letterG Source code
letterT Source code
makePWM Man page Source code
matches-class Man page
motifCutree Man page Source code
motifDistances Man page
motifHclust Man page Source code
motifMatch Man page
motiv Man page
motiv-class Man page
names,filter-method Man page
names,filters-method Man page
names,motiv-method Man page
names<-,motiv-method Man page
occurences Man page Source code
plot Man page
plot,motiv,ANY-method Man page
plot,motiv,gadem-method Man page Man page
plot,motiv-method Man page
plot-methods Man page
plotDistributionDensity Source code
plotMotif Source code
pwm2cons Source code
pwm2ic Source code
readDBScores Man page
readGademPWMFile Man page
readPWMfile Man page Source code
seqLogo2 Man page Source code
setFilter Man page
show,filter-method Man page
show,motiv-method Man page
similarity Man page
similarity,list-method Man page
similarity,motiv-method Man page
split,motiv,filters-method Man page
split,motiv,list-method Man page
split-methods Man page
splitMotiv Source code
summary,filter-method Man page
summary,filters-method Man page
summary,list-method Man page
summary,motiv-method Man page
transcriptionFactor-class Man page
trimPWMedge Man page Source code
viewAlignments Man page
viewMotifs Man page
viewMotifs,motiv-method Man page
viewMotifs-methods Man page
writeDBScores Man page
x2ic Source code
|,filters,filters-method Man page
MotIV documentation built on Oct. 31, 2019, 3:21 a.m.