filter-class: Class "filter"

Description Details Objects from the Class Slots Author(s) See Also Examples

Description

This object information to be apply as filter.

Details

This class filter is used to selected motiv objects according the filter's arguments.

Objects from the Class

Objects can be created by calls of the form new("filter",name,tfname, top,evalueMax, lengthMax, valid).

Slots

name

A name or a list of names.

tfname

A transcription factor name or a list of TF names.

evalueMax

An e-value between 0 and 1.

top

Defined the depth of the filter.

lengthMax

The maximum motif length.

valid

The alignment that should be considered as valid.

Author(s)

Eloi Mercier <emercier@chibi.ubc.ca>

See Also

setFilter , filter, split, combine

Examples

1
showClass("filter")

MotIV documentation built on April 28, 2020, 6:51 p.m.