Counts outliers by Tibshirani-Hastie method by calling outCount after setting up list or by rank outlier method by calling outRank
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dataSet |
Set of matrices of molecular data |
phenotype |
Vector of 1 for case, 0 for control |
tails |
Vector equal to number of matrices with values left or right for where to find outliers |
thres |
alpha value |
method |
Tibshirani , Rank |
corr |
Whether to correct for normal outliers |
offsets |
A vector equal to the number of matrices which sets the minimum value relative to normal to call outlier (corrected rank only) |
A vector with outlier counts by gene
Ochs, M. F., Farrar, J. E., Considine, M., Wei, Y., Meshinchi, S., & Arceci, R. J. (n.d.). Outlier Analysis and Top Scoring Pair for Integrated Data Analysis and Biomarker Discovery. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1-1. doi:10.1109/tcbb.2013.153
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