PICS: Probabilistic inference of ChIP-seq

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

AuthorXuekui Zhang <xzhang@stat.ubc.ca>, Raphael Gottardo <rgottard@fhcrc.org>
Date of publicationNone
MaintainerRenan Sauteraud <rsautera@fhcrc.org>
LicenseArtistic-2.0
Version2.18.0

View on Bioconductor

Files in this package

PICS/DESCRIPTION
PICS/NAMESPACE
PICS/NEWS
PICS/R
PICS/R/PICS.R PICS/R/makeRangedDataOutput.R PICS/R/picsFDR.R PICS/R/segReadsGeneric.R PICS/R/segmentPICS.R PICS/R/segmentReadsPE.R PICS/R/setClasses.R PICS/R/setMethods.R PICS/R/setPara.R
PICS/aclocal.m4
PICS/build
PICS/build/vignette.rds
PICS/cleanup
PICS/configure
PICS/configure.ac
PICS/inst
PICS/inst/CITATION
PICS/inst/doc
PICS/inst/doc/PICS.R
PICS/inst/doc/PICS.Rnw
PICS/inst/doc/PICS.pdf
PICS/inst/extdata
PICS/inst/extdata/Input_tags_chr21_sort.bed
PICS/inst/extdata/Treatment_tags_chr21_sort.bed
PICS/inst/extdata/mapProfileShort
PICS/man
PICS/man/PICS.Rd PICS/man/SegReadsList.Rd PICS/man/bam2gr.Rd PICS/man/makeRangedDataOutput.Rd PICS/man/pics-class.Rd PICS/man/picsError-class.Rd PICS/man/picsFDR.Rd PICS/man/picsList-class.Rd PICS/man/plot-FDR.Rd PICS/man/segChrRead.Rd PICS/man/segReads.Rd PICS/man/segReadsListPE.Rd PICS/man/segReadsPE.Rd PICS/man/segmentPICS.Rd PICS/man/setParaEM.Rd PICS/man/setParaPrior.Rd PICS/man/show.Rd PICS/man/summary.Rd PICS/man/summarySeg.Rd
PICS/src
PICS/src/Makevars.in
PICS/src/Makevars.win
PICS/src/pics.c
PICS/src/segment.c
PICS/vignettes
PICS/vignettes/GPL.txt
PICS/vignettes/PICS.Rnw

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