PICS: Estimation of binding site positions

In PICS: Probabilistic inference of ChIP-seq

Description

This object contains Estimation of binding site positions and has the following slots: segReadsList, dataType.

Usage

PICS(
  segReadsList,
  dataType = NULL,
  paraEM = NULL,
  paraPrior = NULL,
  nCores = 1
)

Arguments

segReadsList	This object contains segmentation of Genome
dataType	A character. The type of data you are processing: 'TF' for transcription factor.
paraEM	A list of parameters for the EM algorithm as returned by the setParaEM function. The default parameters should be good enough for most usages.
paraPrior	A list of parameters for the priors as returned by setParaPrior.
nCores	An integer. The number of cores that should be used in parallel by the function.

Value

An object of class picsList containing the estimated binding site positions.

PICS documentation built on Nov. 8, 2020, 8:21 p.m.